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You may still be able to get into the NetChk GUI by choosing the "Continue" option when getting this message.
I think it may be best if you open a case with support and send in your log files. Here are the best steps to get full trace logs from this process:
-In Netchk go to Tools > Options > Logging and make sure both User Interface and Services are set to “All”. Save.
-Stop all the Shavlik services.
-Delete all the logs from:
-Vista, 2008, & Win7: C:ProgramDataShavlik TechnologiesLogs
-Windows XP & 2003: C:Documents and SettingsAll UsersApplication DataShavlik TechnologiesLogs
-Start the Shavlik services and open NetChk.
-Reproduce the error/issue.
-Afterwards please zip and send all the logs.